vg
tools for working with variation graphs
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#include <getopt.h>
#include <iostream>
#include <htslib/hts.h>
#include <htslib/vcf.h>
#include "subcommand.hpp"
#include "index_registry.hpp"
#include "utility.hpp"
Functions | |
bool | vcf_is_phased (const string &filepath) |
void | help_autoindex (char **argv) |
int | main_autoindex (int argc, char **argv) |
Defines the "vg autoindex" subcommand, which produces indexes needed for other subcommands
void help_autoindex | ( | char ** | argv | ) |
int main_autoindex | ( | int | argc, |
char ** | argv | ||
) |
bool vcf_is_phased | ( | const string & | filepath | ) |