vg
tools for working with variation graphs
Macros | Functions
surject_main.cpp File Reference
#include <omp.h>
#include <unistd.h>
#include <getopt.h>
#include <string>
#include <vector>
#include <set>
#include "subcommand.hpp"
#include <bdsg/hash_graph.hpp>
#include <bdsg/overlays/path_position_overlays.hpp>
#include <bdsg/overlays/overlay_helper.hpp>
#include "../vg.hpp"
#include "../xg.hpp"
#include <vg/io/stream.hpp>
#include <vg/io/vpkg.hpp>
#include "../utility.hpp"
#include "../surjector.hpp"
#include "../hts_alignment_emitter.hpp"
#include "../multipath_alignment_emitter.hpp"

Macros

#define OPT_REF_PATHS   1001
 

Functions

void help_surject (char **argv)
 
int main_surject (int argc, char **argv)
 

Macro Definition Documentation

◆ OPT_REF_PATHS

#define OPT_REF_PATHS   1001

Function Documentation

◆ help_surject()

void help_surject ( char **  argv)

◆ main_surject()

int main_surject ( int  argc,
char **  argv 
)